=========
Tutorials 
=========

.. toctree::
   :maxdepth: 2
	      
   gui_tutorial
   cvr_tutorial
   cli_tutorial

A set of examples of the use of  BASIL (for pcASL), which is similar
to those above, is also available as part of the primer:

*Introduction to Perfusion Quantification using Arterial Spin
Labelling*, Oxford Neuroimaging Primers, Chappell, MacIntosh & Okell,
Oxford University Press, 2017.

The examples themselves are freely available online at the primer
website: neuorimagingprimers.org, you can access the ASL examples
directly here_.

.. _here:
http://www.neuroimagingprimers.org/examples/introduction-to-perfusion-quantification-using-asl/

Preparatory materials
=====================

If you are new to Neuroimaging or to FSL tools you might find the
following resources helpful before looking at the material on ASL.

If you are not particularly familar with MRI you might like to
read a `Short Introduction to MRI Physics for Neuroimaging 
<http://www.neuroimagingprimers.org/online-appendices/>`_ 
available via the neuroimagingprimers.org website.

If you are new to FSL we recommend these three short introductory FSL 
practicals on:

  - `FSLeyes <https://www.youtube.com/watch?v=80d9FoqvuGo&list=PLvgasosJnUVku_GE64BfFuftEvh3Y8lHC&index=1>`_
  - `BET <https://www.youtube.com/watch?v=CcjBoqpgACc&index=1&list=PLvgasosJnUVku_GE64BfFuftEvh3Y8lHC>`_
  - `FSL Utils <https://www.youtube.com/watch?v=7Ud6uBuxqXY&list=PLvgasosJnUVku_GE64BfFuftEvh3Y8lHC&index=2>`_